Abstract: In article topical issues of formation of effective model of public administration by a fishery complex of regions of the Far East are considered. Research objective is formation of model of public administration by a fishery complex which will provide optimum impact of the government and public institutions on fishery economy at all levels.Object of research is the fishery complex of regions of the Far East. An object of research the mechanisms of public administration influencing development of a fishery complex of regions of the Far East.The methodological and theoretical basis of research was made by works of the Russian scientists concerning development of fishing activities, practice of management of a fishery complex. The main methods of research are system approach, the analysis and synthesis, the analysis of documents, the comparative analysis, the analysis of statistical data, the design analysis. For reliability of the received results in work the data of a rating on a public-private partnership level of development in regions of the Russian Federation made by a technique of the Center of development of public-private partnership together with the Ministry of Economic Development of the Russian Federation are used.Formation of two-level sintezny model of public administration by a fishery complex of regions of the Far East on the basis of the principle of subsidiarity is offered. This model assumes increase of efficiency of fishing activities by means of development of market mechanisms in system of a fishery complex. As the main administrative method of regulation at the level of the state the increase in a closing date of contracts on fixing of shares of quotas of production (catch) of water biological resources locates.For development of market mechanisms in structure of management of a fishery complex at the level of the region, the project of creation of the PPP Far East Territorial center which activity will also be based on the principles of PPP, including by means of outsourcing of a significant amount of the functions to private enterprises is offered.